Guidelines
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CABRI Guidelines for Catalogue Production
Guidelines prepared for CABRI by BCCM, CBS, CERDIC, DSMZ, ECACC, HGMP, INRC, MSDN
Page layout by CERDIC
| Data input & authentication | Flat file preparation | Flat file submission |
Plasmids format and reference list: Agreed list for Host for distribution for plasmids
This field should contain the complete input value, consisting of three parts:
- taxonomic designation
- group (when applicable)
- strain designation, which should be entered as one single word, including, in the following order:
- chromosomal information
- episomal information
- lambda information
Additional information (e.g. genetic description of the strain) should be entered behind the strain designation, separated by a space and placed between brackets.
To be indexed by CABRI, and as such searchable:
- the complete input value as a group of words (excl. additional information)
- the taxonomic designation as single terms
The thesaurus file containing the thesaurus values must be implemented in the same way as the synonym file for the "Name" field in e.g. the bacteria catalogues.
| Input value | Thesaurus value |
| Agrobacterium tumefaciens C58 | C58 |
| Agrobacterium tumefaciens LBA4404 GV3101 | LBA4404 GV3101 |
| Alcaligenes denitrificans AH | AH |
| Alcaligenes sp. Cur30 | Cur30 |
| Alcaligenes sp. O-1 | O-1 |
| Alcaligenes sp. PW | PW |
| Bacillus subtilis 1012 | 1012 |
| Bacillus subtilis 168 | 168 |
| Bacillus subtilis 1E18 | 1E18 |
| Bacillus subtilis 1E31 | 1E31 |
| Bacillus subtilis 1E32 | 1E32 |
| Bacillus subtilis 1E34 | 1E34 |
| Bacillus subtilis 1E7 | 1E7 |
| Bacillus subtilis 1G-34 | 1G-34 |
| Bacillus subtilis 2G-20 | 2G-20 |
| Bacillus subtilis 3335 UM4 | UM4 |
| Bacillus subtilis 3335 UM8 | UM8 |
| Bacillus subtilis BD170 | BD170 |
| Bacillus subtilis BD403 | BD403 |
| Bacillus subtilis BD426 | BD426 |
| Bacillus subtilis BD466 | BD466 |
| Bacillus subtilis BD490 | BD490 |
| Bacillus subtilis BR151 | BR151 |
| Bacillus subtilis BR157 | BR157 |
| Bacillus subtilis DB163 | DB163 |
| Bacillus subtilis KBS1 | KBS1 |
| Bacillus subtilis KBS2 | KBS2 |
| Bacillus subtilis KBS3 | KBS3 |
| Bacillus subtilis SB202 | SB202 |
| Bacillus subtilis YB886 | YB886 |
| Corynebacterium glutamicum LA201 | LA201 |
| Enterococcus faecalis V347 | V347 |
| Escherichia coli | |
| Escherichia coli B BL21(DE3) | BL21(DE3) |
| Escherichia coli B WP2 | WP2 |
| Escherichia coli B WP2uvrA | WP2 |
| Escherichia coli BNN45 | BNN45 |
| Escherichia coli CMK603 | CMK603 |
| Escherichia coli K12 | K12 |
| Escherichia coli K12 1046 | 1046 |
| Escherichia coli K12 294 | 294 |
| Escherichia coli K12 5K | 5K |
| Escherichia coli K12 803 | 803 |
| Escherichia coli K12 AB1157 | AB1157 |
| Escherichia coli K12 AB1157umuC36 | AB1157 |
| Escherichia coli K12 AB2463 | AB2463 |
| Escherichia coli K12 AG1688 | AG1688 |
| Escherichia coli K12 AM1062 | AM1062 |
| Escherichia coli K12 AN1459 | AN1459 |
| Escherichia coli K12 AW1061 | AW1061 |
| Escherichia coli K12 BHB2600 | BHB2600 |
| Escherichia coli K12 BMH71-18 | BMH71-18 |
| Escherichia coli K12 C600 | C600 |
| Escherichia coli K12 C600 SF8 | C600 SF8 |
| Escherichia coli K12 CB450 | CB450 |
| Escherichia coli K12 CC118(lambdapir) | CC118 |
| Escherichia coli K12 CJ236 | CJ236 |
| Escherichia coli K12 CL83 | CL83 |
| Escherichia coli K12 CR34 | CR34 |
| Escherichia coli K12 CSH26 | CSH26 |
| Escherichia coli K12 CSH52 | CSH52 |
| Escherichia coli K12 DB1443 | DB1443 |
| Escherichia coli K12 DH1 | DH1 |
| Escherichia coli K12 DH1 RU2945 | DH1 RU2945 |
| Escherichia coli K12 DH1(lambda) | DH1 |
| Escherichia coli K12 DH5 | DH5 |
| Escherichia coli K12 DH5alpha | DH5 |
| Escherichia coli K12 DH5alphaF’ | DH5 |
| Escherichia coli K12 DS410(lambdacIts) | DS410 |
| Escherichia coli K12 EC294 | EC294 |
| Escherichia coli K12 ED8654 | ED8654 |
| Escherichia coli K12 F165 | F165 |
| Escherichia coli K12 GEc137 | Gec137 |
| Escherichia coli K12 GM119 | GM119 |
| Escherichia coli K12 GM31 | GM31 |
| Escherichia coli K12 H12R8a | H12R8a |
| Escherichia coli K12 HB101 | HB101 |
| Escherichia coli K12 HB101 B1046 | HB101 B1046 |
| Escherichia coli K12 HMS174 | HMS174 |
| Escherichia coli K12 J53 | J53 |
| Escherichia coli K12 J53-2 | J53 |
| Escherichia coli K12 J62 | J62 |
| Escherichia coli K12 JA221 | JA221 |
| Escherichia coli K12 JA228 | JA228 |
| Escherichia coli K12 JC411 | JC411 |
| Escherichia coli K12 JH372 | JH372 |
| Escherichia coli K12 JM101 | JM101 |
| Escherichia coli K12 JM101hsdR | JM101 |
| Escherichia coli K12 JM101hsdSrecA | JM101 |
| Escherichia coli K12 JM103 | JM103 |
| Escherichia coli K12 JM108 | JM108 |
| Escherichia coli K12 JM109 | JM109 |
| Escherichia coli K12 JM83 | JM83 |
| Escherichia coli K12 JMB9 | JMB9 |
| Escherichia coli K12 JMP396RifrNalr | JMP396 |
| Escherichia coli K12 JMP397RifrNalr | JMP397 |
| Escherichia coli K12 JMP398RifrNalr | JMP398 |
| Escherichia coli K12 JMP399RifrNalr | JMP399 |
| Escherichia coli K12 JS218 | JS218 |
| Escherichia coli K12 JS219 | JS219 |
| Escherichia coli K12 K12deltaH1 | K12 |
| Escherichia coli K12 K12deltaH1deltatrp | K12 NF1 |
| Escherichia coli K12 K12deltaH1deltatrpF'Lac | K12 |
| Escherichia coli K12 K12r-m+(lambda) | K12 |
| Escherichia coli K12 K38 | K38 |
| Escherichia coli K12 K514(lambda) | K514 |
| Escherichia coli K12 K803 | K803 |
| Escherichia coli K12 KMBL1164 | KMBL1164 |
| Escherichia coli K12 LG75 | LG75 |
| Escherichia coli K12 LK111 | LK111 |
| Escherichia coli K12 M182 | M182 |
| Escherichia coli K12 M5219 | M5219 |
| Escherichia coli K12 MA8 | MA8 |
| Escherichia coli K12 MC1000 | MC1000 |
| Escherichia coli K12 MC1009 | MC1009 |
| Escherichia coli K12 MC1022 | MC1022 |
| Escherichia coli K12 MC1060 | MC1060 |
| Escherichia coli K12 MC1061 | MC1061 |
| Escherichia coli K12 MC1061(lambda) | MC1061 |
| Escherichia coli K12 MC1061F' | MC1061 |
| Escherichia coli K12 MC1065 | MC1065 |
| Escherichia coli K12 MC1066 | MC1066 |
| Escherichia coli K12 MH1 | MH1 |
| Escherichia coli K12 MM294 | MM294 |
| Escherichia coli K12 NM522 | NM522 |
| Escherichia coli K12 PC2166 | PC2166 |
| Escherichia coli K12 PM191 | PM191 |
| Escherichia coli K12 pop2136 | pop2136 |
| Escherichia coli K12 QD5003 | QD5003 |
| Escherichia coli K12 RR1 | RR1 |
| Escherichia coli K12 RR1(lambdacI857) | RR1 |
| Escherichia coli K12 RR1ZdeltaM15 | RR1 |
| Escherichia coli K12 RR28 | RR28 |
| Escherichia coli K12 S17-1 | S17-1 |
| Escherichia coli K12 S17-1(lambdapir) | S17-1 |
| Escherichia coli K12 S17-1chi6149 | S17-1 |
| Escherichia coli K12 SC109 | SC109 |
| Escherichia coli K12 SE6004 | SE6004 |
| Escherichia coli K12 SK1592 | SK1592 |
| Escherichia coli K12 SK2284 | SK2284 |
| Escherichia coli K12 SL2036 | SL2036 |
| Escherichia coli K12 SURE | SURE |
| Escherichia coli K12 TB1 | TB1 |
| Escherichia coli K12 UT4400 | UT4400 |
| Escherichia coli K12 W3110 mutant | W3110 |
| Escherichia coli K12 W3110thy- | W3110 |
| Escherichia coli K12 WA803 | WA803 |
| Escherichia coli K12 WN837 | WN837 |
| Escherichia coli K12 XL1 Blue | XL1 |
| Escherichia coli K12 Y1088 | Y1088 |
| Escherichia coli K12 Y1089 | Y1089 |
| Escherichia coli K12 Y1090 | Y1090 |
| Escherichia coli MC101 | MC101 |
| Escherichia coli N100 | N100 |
| Escherichia coli N99cI+ | N99 |
| Escherichia coli V517 | V517 |
| Escherichia coli V854 | V854 |
| Escherichia coli W6(lambdarex) | W6 |
| Escherichia coli YMC9 | YMC9 |
| Gordona rubropertinctus | |
| Lactobacillus paracasei subsp. paracasei YIT9032 | YIT9032 |
| Lactobacillus reuteri LINCO | LINCO |
| Lactobacillus reuteri SH23 | SH23 |
| Lactobacillus reuteri STOCK | STOCK |
| Lactococcus lactis subsp. cremoris AC1 | AC1 |
| Lactococcus lactis subsp. cremoris MF3 | MF3 |
| Lactococcus lactis subsp. cremoris Wg2 | Wg2 |
| Lactococcus lactis subsp. lactis 3078 | 3078 |
| Lactococcus lactis subsp. lactis F7/2 | F7/2 |
| Lactococcus lactis subsp. lactis FA318 | FA318 |
| Lactococcus lactis subsp. lactis LMO230 | LMO230 |
| Lactococcus lactis subsp. lactis W53 | W53 |
| Lactococcus lactis subsp. lactis W932 | W932 |
| Pseudomonas aeruginosa PAO11Trp-Nal- | PAO11 |
| Pseudomonas aeruginosa PAO8 | PAO8 |
| Pseudomonas aeruginosa PU21 | PU21 |
| Pseudomonas fluorescens 5RL | 5RL |
| Pseudomonas fluorescens HK44 | HK44 |
| Pseudomonas putida KF439 | KF439 |
| Pseudomonas putida MT15 | MT15 |
| Pseudomonas putida mt-2 PaW1 | mt-2 PaW1 |
| Pseudomonas putida MT20 | MT20 |
| Pseudomonas putida MT53 | MT53 |
| Pseudomonas putida PaW611 | PaW611 |
| Pseudomonas putida PaW701 | PaW701 |
| Pseudomonas putida PaW736 | PaW736 |
| Pseudomonas putida PpG1 | PpG1 |
| Pseudomonas putida PpG2100 | PpG2100 |
| Pseudomonas putida PpG25 | PpG25 |
| Pseudomonas putida PpG7 | PpG7 |
| Pseudomonas putida RB1351 | RB1351 |
| Pseudomonas sp. MT14 | MT14 |
| Pseudomonas sp. MT14-100 | MT14-100 |
| Pseudomonas sp. MT14-101 | MT14-101 |
| Pseudomonas sp. MT14-26 | MT14-26 |
| Ralstonia eutropha H16 | H16 |
| Ralstonia eutropha JMP134 | JMP134 |
| Ralstonia eutropha JMP363 | JMP363 |
| Ralstonia eutropha JMP364 | JMP364 |
| Ralstonia eutropha JMP365 | JMP365 |
| Ralstonia eutropha JMP366 | JMP366 |
| Rhizobium trifolii ANU618 | ANU618 |
| Rhizobium trifolii LPR5035 | LPR5035 |
| Salmonella choleraesuis subsp. choleraesuis TA1535 | TA1535 |
| Sinorhizobium meliloti 41AK631 | 41AK631 |
| Sinorhizobium meliloti MVII/1 | MVII/1 |
| Staphylococcus aureus subsp. aureus SA1494 | SA1494 |
| Staphylococcus aureus subsp. aureus SA2044 | SA2044 |
| Staphylococcus aureus subsp. aureus SK982 | SK982 |
| Staphylococcus carnosus TM300 | TM300 |
| Streptococcus thermophilus St | St |
| Streptomyces ambofaciens B2 | B2 |
| Streptomyces ambofaciens B3 | B3 |
| Streptomyces sp. TK23 | TK23 |
| Variovorax paradoxus JMP116 | JMP116 |
| Zymomonas mobilis subsp. mobilis |
This work cannot be reproduced in whole or in part without the express written permission of the CABRI consortium.
Site maintained by Paolo Romano. Last revised: February 2023.