Guidelines
CELL LINES
PLANT CELL LINES
PLANT VIRUSES
PLASMIDS
PHAGES
MICROORGANISMS
GENOMIC LIBRARIES
PROCEDURES
CATALOGUE
CABRI Guidelines for Catalogue Production
Guidelines prepared for CABRI by BCCM, CBS, CERDIC, DSMZ, ECACC, HGMP, INRC, MSDN
Page layout by CERDIC
| Data input & authentication | Flat file preparation | Flat file submission |
Data input & authentication for plant cell viruses
Data Sets
Data entry and validation
| Accessionnumber | Original Host Plant |
Field |
Accession Number |
Description |
Accession number assigned by the collection |
Input process |
unique identifier |
Required for |
MDS |
Field |
Virus Name |
Description |
Valid species name of the virus |
Input process |
Should be entered according to
the:
|
Required for |
MDS |
Field |
Virus Name Abbreviation |
Description |
Species name abbreviation |
Input process |
|
Required for |
MDS |
Field |
Former Name |
Description |
Former name of the isolate, e.g., in case a patho- or serotype has been assigned to another species |
Input process |
Former name entered according to the ICTV: http://www.ncbi.nlm.nih.gov/ICTV/ |
Required for |
MDS |
Field |
Genus |
Description |
Genus to which the virus species has been assigned |
Input process |
Genus name entered according to the ICTV: http://www.ncbi.nlm.nih.gov/ICTV/ |
Required for |
MDS |
Field |
Pathotype_Serotype_Strain |
Description |
"Pathotype: ", "Serotype: " or "Strain: " followed by pathotype, serotype or strain designation. |
Input process |
|
Required for |
MDS |
Field |
Original_Host_Plant |
Description |
should contain: - Original host plant - Subspecies - variety - cultivar or breeding line - vernacular name |
Input process |
Original host plant: - species (latin binominal), - subspecies (latin), - variety (latin) - cultivar or breeding line (original designation), vernacular name (English or original designation). The vernacular name is listed only in special cases, e.g., if the vernacular name given by the depositor cannot be unequivocally assigned to a plant species. |
Required for |
MDS |
Field |
Geographic Origin |
Description |
Country, and, if available, more detailed information on the geographic position where the original host plant was found. |
Input process |
Free text |
Required for |
MDS |
Field |
Isolate History |
Description |
Name of the scientist, who isolated the specimen and of persons or organisations that kept it before accessioning. |
Input process |
After each name (person or organisation), the respective isolate designation is given between single quotation marks. |
Required for |
MDS |
Field |
Reference Isolate |
Description |
Literature on the virus isolate |
Input process |
new entry: JournalTitle Year ;Volume(issue):beginning page#-ending page#The journal title is abbreviated following international standard rules. The abbreviations are without dot. Authors and title of the article are not mentioned. existing catalogues: conversion by SRS following CABRI agreed |
Required for |
MDS |
Field |
Quarantine Regulations |
Description |
should contain: "yes" if EU quarantine regulations for the virus species are known. |
Input process |
Yes/no |
Required for |
MDS |
Field |
Remarks |
Description |
Special features of the isolate, e.g., virulence |
Input process |
Free text |
Required for |
MDS |
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Site maintained by Paolo Romano. Last revised: February 2023.