CABRI: Catalogue production guidelines: genomic libraries: data input

CABRI Guidelines for Catalogue Production

Guidelines prepared for CABRI by BCCM, CBS, CERDIC, DSMZ, ECACC, HGMP, INRC, MSDN
Page layout by CERDIC

Data input & authentication Flat file preparation Flat file submission

Data input & authentication for genomic libraries

Data Sets

Data entry and validation

Field	Library Name
Description	library Identifier e.g. WI/MIT, RCPI1
Input Process	Ensure Every Library has Unique identifier, New Library as given by depositor.
Required for	MDS

Organism

Field

Organism

Description

The Organism represented in the Library

Input Process

CABRI agreed list (Note: may have multiple species):

Organism		Synonym
Mouse		Murine, Mus Musculus
Human		Homo Sapiens
Rat
Fugu
Drosophila
Dog		Canine

Required for

MDS

Type of Library

Field	Type
Description	Type of Library
Input Process	CABRI agreed list: PAC BAC YAC PI cDNA
Required for	MDS

Vector

Field	Vector
Description	Vector name , more specific than type as will be specific about vector e.g. pCYPAC, Lawrist4
Input Process	Supplied by depositor, may have multiple vectors per library
Required for	MDS

Insert Size

Field	Insert Size
Description	Average size of inserts in vector in Kb
Input Process	Numeric entry
Required for	MDS

Library coverage

Field	Library coverage
Description	Degree of coverage
Input Process	Numeric entry
Required for	MDS

MTA required

Field	MTA required
Description	Is a material Transfer Agreement required
Input Process	"Yes" or "No"
Required for	MDS

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